1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:7.04e-30:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB18_RS00610
Response regulator OmpR family
Clostridioides difficile · GCF_036698935
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036698935#LFB18_RS00610Stable P2CS identifier used across views.
GenomeGCF_036698935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 223 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-219 aa · 77 aa · 34.5% of protein
Raw token
Trans_reg_C:143:2.29e-28:219:77:77- Raw architecture: Response_reg:4:7.04e-30:112:110:111#Trans_reg_C:143:2.29e-28:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036698935::NZ_JAJBYG010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133230-134811Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036698935::NZ_JAJBYG010000001.1::G00002Context members
LFB18_RS00610LFB18_RS00615
Partner locus tags
LFB18_RS00610LFB18_RS00615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231307144.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB18_RS00610Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBYG010000001.1Sequence record reported by the local genomic context database.
Genomic interval133 230-133 901 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span133 230-134 811 ntGCF_036698935::NZ_JAJBYG010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036698935::NZ_JAJBYG010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBYG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span133 230-134 811 nt1 582 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 230 nt134 811 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LFB18_RS00610GCF_036698935#LFB18_RS00610
RROmpRCurrent focus
133 230-133 901 nt · Forward (+)
LFB18_RS00615GCF_036698935#LFB18_RS00615
HKClassic
133 903-134 811 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036698495#LFB05_RS02630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1621895
Simplified PFAM architecture for RROC_1621895
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[143-218]
- Domain count: 2
- Matched identifier: RROC_1621895
- Positioned domains: Response_reg 4-111 ; Trans_reg_C 143-218
Cluster members and taxonomy
Representative gene: GCF_036698495#LFB05_RS02630
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 4 over 4 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036698935
AssemblyASM3669893v1 · Contighaploid
Genome composition4 242 413 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key