1 Response_reg#1
5-113 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:5:2.91e-29:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFA86_RS05595
Response regulator OmpR family
Clostridioides difficile · GCF_036698175
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036698175#LFA86_RS05595Stable P2CS identifier used across views.
GenomeGCF_036698175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-225 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:148:1.77e-30:225:78:77- Raw architecture: Response_reg:5:2.91e-29:113:110:111#Trans_reg_C:148:1.77e-30:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036698175::NZ_JAJBXB010000005.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32688-34623Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036698175::NZ_JAJBXB010000005.1::G00043Context members
LFA86_RS05595LFA86_RS05600
Partner locus tags
LFA86_RS05595LFA86_RS05600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_332973780.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFA86_RS05595Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBXB010000005.1Sequence record reported by the local genomic context database.
Genomic interval32 688-33 392 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 688-34 623 ntGCF_036698175::NZ_JAJBXB010000005.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036698175::NZ_JAJBXB010000005.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBXB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span32 688-34 623 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 688 nt34 623 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LFA86_RS05595GCF_036698175#LFA86_RS05595
RROmpRCurrent focus
32 688-33 392 nt · Forward (+)
LFA86_RS05600GCF_036698175#LFA86_RS05600
HKClassic
33 370-34 623 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036698175#LFA86_RS05595The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1070153
Simplified PFAM architecture for RROC_1070153
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1070153
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_036698175#LFA86_RS05595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036698175
AssemblyASM3669817v1 · Contighaploid
Genome composition4 198 386 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 50 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key