1 HisKA#1
460-527 aa · 68 aa · 9.9% of protein
Raw token
HisKA:460:0.0000000000000221:527:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFA80_RS03915
Histidine kinase, Classic
Clostridioides difficile · GCF_036697915
ClassHKTypeClassicLength689 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036697915#LFA80_RS03915Stable P2CS identifier used across views.
GenomeGCF_036697915Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length689 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 689 aa (23.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa689 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
573-666 aa · 94 aa · 13.6% of protein
Raw token
HATPase_c:573:0.000000000000939:666:98:109- Raw architecture: HisKA:460:0.0000000000000221:527:68:64#HATPase_c:573:0.000000000000939:666:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036697915::NZ_JAJBWO010000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span237887-240844Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036697915::NZ_JAJBWO010000003.1::G00035Context members
LFA80_RS03915LFA80_RS03920
Partner locus tags
LFA80_RS03915LFA80_RS03920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070113346.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFA80_RS03915Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBWO010000003.1Sequence record reported by the local genomic context database.
Genomic interval237 887-239 956 nt2 070 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span237 887-240 844 ntGCF_036697915::NZ_JAJBWO010000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036697915::NZ_JAJBWO010000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBWO010000003.1All displayed genes belong to this local TCS context.
Neighborhood span237 887-240 844 nt2 958 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
237 887 nt240 844 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LFA80_RS03915GCF_036697915#LFA80_RS03915
HKClassicCurrent focus
237 887-239 956 nt · Reverse (-)
LFA80_RS03920GCF_036697915#LFA80_RS03920
RROmpR
240 152-240 844 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757605#BW28_RS16845Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0794313
Simplified PFAM architecture for HKOC_0794313
PFAM domain coverage: 160 / 689 aa (23.2%)
1 aa689 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[460-527] | HATPase_c[574-665]
- Domain count: 2
- Matched identifier: HKOC_0794313
- Positioned domains: HisKA 460-527 ; HATPase_c 574-665
Cluster members and taxonomy
Representative gene: GCF_001757605#BW28_RS16845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036697915
AssemblyASM3669791v1 · Contighaploid
Genome composition4 190 595 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key