1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000934:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB16_RS06620
Histidine kinase, Classic
Clostridioides difficile · GCF_036688855
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_036688855#LFB16_RS06620Stable P2CS identifier used across views.
GenomeGCF_036688855Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:2.85e-30:668:104:109- Raw architecture: HisKA:449:0.00000000934:514:66:64#HATPase_c:565:2.85e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_036688855::NZ_JAJMRE010000005.1::G00048
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span94598-100321Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036688855::NZ_JAJMRE010000005.1::G00048Context members
LFB16_RS06605LFB16_RS06610LFB16_RS06615LFB16_RS06620LFB16_RS06625
Partner locus tags
LFB16_RS06605LFB16_RS06610LFB16_RS06615LFB16_RS06620LFB16_RS06625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022619916.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB16_RS06620Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJMRE010000005.1Sequence record reported by the local genomic context database.
Genomic interval97 557-99 572 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span94 598-100 321 ntGCF_036688855::NZ_JAJMRE010000005.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036688855::NZ_JAJMRE010000005.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJMRE010000005.1All displayed genes belong to this local TCS context.
Neighborhood span94 598-100 321 nt5 724 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 598 nt100 321 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
LFB16_RS06605GCF_036688855#LFB16_RS06605
HKClassic
94 598-95 713 nt · Reverse (-)
LFB16_RS06610GCF_036688855#LFB16_RS06610
RROmpR
95 749-96 447 nt · Reverse (-)
LFB16_RS06615GCF_036688855#LFB16_RS06615
RROmpR
96 827-97 507 nt · Reverse (-)
LFB16_RS06620GCF_036688855#LFB16_RS06620
HKClassicCurrent focus
97 557-99 572 nt · Reverse (-)
LFB16_RS06625GCF_036688855#LFB16_RS06625
RROmpR
99 644-100 321 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS16560Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842605
Simplified PFAM architecture for HKOC_0842605
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842605
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS16560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036688855
AssemblyASM3668885v1 · Contighaploid
Genome composition4 148 092 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key