1 HisKA#1
89-152 aa · 64 aa · 20.8% of protein
Raw token
HisKA:89:0.00000000434:152:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB15_RS05435
Histidine kinase, Classic
Clostridioides difficile · GCF_036688765
ClassHKTypeClassicLength307 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036688765#LFB15_RS05435Stable P2CS identifier used across views.
GenomeGCF_036688765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length307 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 307 aa (56.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa307 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-306 aa · 108 aa · 35.2% of protein
Raw token
HATPase_c:199:7.29e-28:306:108:109- Raw architecture: HisKA:89:0.00000000434:152:64:64#HATPase_c:199:7.29e-28:306:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036688765::NZ_JAJMQY010000004.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67830-69463Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036688765::NZ_JAJMQY010000004.1::G00038Context members
LFB15_RS05430LFB15_RS05435
Partner locus tags
LFB15_RS05430LFB15_RS05435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_332868816.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB15_RS05435Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJMQY010000004.1Sequence record reported by the local genomic context database.
Genomic interval68 540-69 463 nt924 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 830-69 463 ntGCF_036688765::NZ_JAJMQY010000004.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036688765::NZ_JAJMQY010000004.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJMQY010000004.1All displayed genes belong to this local TCS context.
Neighborhood span67 830-69 463 nt1 634 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 830 nt69 463 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LFB15_RS05430GCF_036688765#LFB15_RS05430
RROmpR
67 830-68 537 nt · Forward (+)
LFB15_RS05435GCF_036688765#LFB15_RS05435
HKClassicCurrent focus
68 540-69 463 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036688765#LFB15_RS05435The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881096
Simplified PFAM architecture for HKOC_2881096
PFAM domain coverage: 172 / 307 aa (56.0%)
1 aa307 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-152] | HATPase_c[199-306]
- Domain count: 2
- Matched identifier: HKOC_2881096
- Positioned domains: HisKA 89-152 ; HATPase_c 199-306
Cluster members and taxonomy
Representative gene: GCF_036688765#LFB15_RS05435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036688765
AssemblyASM3668876v1 · Contighaploid
Genome composition4 140 762 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key