1 Response_reg#1
9-97 aa · 89 aa · 90.8% of protein
Raw token
Response_reg:9:1.23e-21:97:90:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB23_RS07955
Response regulator, CheY family
Clostridioides difficile · GCF_036688745
ClassRRTypeCheYLength98 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036688745#LFB23_RS07955Stable P2CS identifier used across views.
GenomeGCF_036688745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length98 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage89 / 98 aa (90.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa98 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:1.23e-21:97:90:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036688745::NZ_JAJMRA010000072.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14932-15224Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036688745::NZ_JAJMRA010000072.1::G00058Context members
LFB23_RS07955
Partner locus tags
LFB23_RS07955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_332849508.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB23_RS07955Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJMRA010000072.1Sequence record reported by the local genomic context database.
Genomic interval14 932-15 224 nt293 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 932-15 224 ntGCF_036688745::NZ_JAJMRA010000072.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036688745::NZ_JAJMRA010000072.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJMRA010000072.1All displayed genes belong to this local TCS context.
Neighborhood span14 932-15 224 nt293 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 932 nt15 224 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LFB23_RS07955GCF_036688745#LFB23_RS07955
RRCheYCurrent focus
14 932-15 224 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451085#QSE_RS03445Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806970
Simplified PFAM architecture for RROC_0806970
PFAM domain coverage: 165 / 244 aa (67.6%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-211]
- Domain count: 2
- Matched identifier: RROC_0806970
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-211 ; Trans_reg_C 156-211
Cluster members and taxonomy
Representative gene: GCF_000451085#QSE_RS03445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036688745
AssemblyASM3668874v1 · Contighaploid
Genome composition4 044 838 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 42 · RR 53CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key