1 Response_reg#1
5-117 aa · 113 aa · 48.7% of protein
Raw token
Response_reg:5:3.81e-22:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V3Q17_RS00615
Response regulator, unclassified
Clostridioides difficile · GCF_036442885
ClassRRTypeunclassifiedLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036442885#V3Q17_RS00615Stable P2CS identifier used across views.
GenomeGCF_036442885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 232 aa (66.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
186-226 aa · 41 aa · 17.7% of protein
Raw token
HTH_AraC:186:0.0000385:226:41:42- Raw architecture: Response_reg:5:3.81e-22:117:113:111#HTH_AraC:186:0.0000385:226:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036442885::NZ_JAZGYK010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span158970-161287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV3Q17_00615RefSeq proteinWP_331311400.1
Context group ID
GCF_036442885::NZ_JAZGYK010000001.1::G00002Context members
V3Q17_RS00615V3Q17_RS00620
Partner locus tags
V3Q17_RS00615V3Q17_RS00620
Partner old locus tags
V3Q17_00615V3Q17_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331311400.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV3Q17_RS00615Primary locus identifier stored in the genes table.
Old locus tagV3Q17_00615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAZGYK010000001.1Sequence record reported by the local genomic context database.
Genomic interval158 970-159 668 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span158 970-161 287 ntGCF_036442885::NZ_JAZGYK010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036442885::NZ_JAZGYK010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAZGYK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span158 970-161 287 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
158 970 nt161 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V3Q17_RS00615GCF_036442885#V3Q17_RS00615
RRunclassifiedCurrent focus
158 970-159 668 nt · Reverse (-)
V3Q17_RS00620GCF_036442885#V3Q17_RS00620
HKClassic
159 782-161 287 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036442885#V3Q17_RS00615The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1146183
Simplified PFAM architecture for RROC_1146183
PFAM domain coverage: 189 / 232 aa (81.5%)
1 aa232 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-227]
- Domain count: 2
- Matched identifier: RROC_1146183
- Positioned domains: Response_reg 5-116 ; HTH_18 151-227
Cluster members and taxonomy
Representative gene: GCF_036442885#V3Q17_RS00615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036442885
AssemblyASM3644288v1 · Contighaploid
Genome composition4 137 045 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 45 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key