1 Response_reg#1
5-112 aa · 108 aa · 52.7% of protein
Raw token
Response_reg:5:4.66e-25:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V3Q04_RS10030
Response regulator OmpR family
Clostridioides difficile · GCF_036442485
ClassRRTypeOmpRLength205 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_036442485#V3Q04_RS10030Stable P2CS identifier used across views.
GenomeGCF_036442485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length205 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 205 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa205 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-203 aa · 57 aa · 27.8% of protein
Raw token
Trans_reg_C:147:4.22e-20:203:57:77- Raw architecture: Response_reg:5:4.66e-25:112:109:111#Trans_reg_C:147:4.22e-20:203:57:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_036442485::NZ_JAZGZB010000008.1::G00053
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span79596-83089Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV3Q04_10030RefSeq proteinWP_235671207.1
Context group ID
GCF_036442485::NZ_JAZGZB010000008.1::G00053Context members
V3Q04_RS10020V3Q04_RS10025V3Q04_RS10030
Partner locus tags
V3Q04_RS10020V3Q04_RS10025V3Q04_RS10030
Partner old locus tags
V3Q04_10020V3Q04_10025V3Q04_10030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235671207.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV3Q04_RS10030Primary locus identifier stored in the genes table.
Old locus tagV3Q04_10030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAZGZB010000008.1Sequence record reported by the local genomic context database.
Genomic interval82 472-83 089 nt618 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 596-83 089 ntGCF_036442485::NZ_JAZGZB010000008.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036442485::NZ_JAZGZB010000008.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAZGZB010000008.1All displayed genes belong to this local TCS context.
Neighborhood span79 596-83 089 nt3 494 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 596 nt83 089 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
V3Q04_RS10020GCF_036442485#V3Q04_RS10020
RROmpR
79 596-80 276 nt · Reverse (-)
V3Q04_RS10025GCF_036442485#V3Q04_RS10025
HKClassic
80 326-82 341 nt · Reverse (-)
V3Q04_RS10030GCF_036442485#V3Q04_RS10030
RROmpRCurrent focus
82 472-83 089 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003862895#EGL93_RS11010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2092486
Simplified PFAM architecture for RROC_2092486
PFAM domain coverage: 165 / 205 aa (80.5%)
1 aa205 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-203]
- Domain count: 2
- Matched identifier: RROC_2092486
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-203 ; Trans_reg_C 147-203
Cluster members and taxonomy
Representative gene: GCF_003862895#EGL93_RS11010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036442485
AssemblyASM3644248v1 · Contighaploid
Genome composition4 292 696 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key