1 HisKA#1
148-211 aa · 64 aa · 17.3% of protein
Raw token
HisKA:148:0.0000000000000742:211:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V3P90_RS07760
Histidine kinase, Classic
Clostridioides difficile · GCF_036442095
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_036442095#V3P90_RS07760Stable P2CS identifier used across views.
GenomeGCF_036442095Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 371 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
260-368 aa · 109 aa · 29.4% of protein
Raw token
HATPase_c:260:3.91e-25:368:110:109- Raw architecture: HisKA:148:0.0000000000000742:211:64:64#HATPase_c:260:3.91e-25:368:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_036442095::NZ_JAZGYN010000004.1::G00050
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span42441-48165Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV3P90_07760RefSeq proteinWP_021397421.1
Context group ID
GCF_036442095::NZ_JAZGYN010000004.1::G00050Context members
V3P90_RS07760V3P90_RS07765V3P90_RS07770V3P90_RS07775V3P90_RS07780
Partner locus tags
V3P90_RS07760V3P90_RS07765V3P90_RS07770V3P90_RS07775V3P90_RS07780
Partner old locus tags
V3P90_07760V3P90_07765V3P90_07770V3P90_07775V3P90_07780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021397421.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV3P90_RS07760Primary locus identifier stored in the genes table.
Old locus tagV3P90_07760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAZGYN010000004.1Sequence record reported by the local genomic context database.
Genomic interval42 441-43 556 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 441-48 165 ntGCF_036442095::NZ_JAZGYN010000004.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036442095::NZ_JAZGYN010000004.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAZGYN010000004.1All displayed genes belong to this local TCS context.
Neighborhood span42 441-48 165 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 441 nt48 165 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
V3P90_RS07760GCF_036442095#V3P90_RS07760
HKClassicCurrent focus
42 441-43 556 nt · Reverse (-)
V3P90_RS07765GCF_036442095#V3P90_RS07765
RROmpR
43 592-44 290 nt · Reverse (-)
V3P90_RS07770GCF_036442095#V3P90_RS07770
RROmpR
44 671-45 351 nt · Reverse (-)
V3P90_RS07775GCF_036442095#V3P90_RS07775
HKClassic
45 401-47 416 nt · Reverse (-)
V3P90_RS07780GCF_036442095#V3P90_RS07780
RROmpR
47 488-48 165 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450145#QK3_RS16740Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2676374
Simplified PFAM architecture for HKOC_2676374
PFAM domain coverage: 174 / 371 aa (46.9%)
1 aa371 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[149-213] | HATPase_c[261-369]
- Domain count: 2
- Matched identifier: HKOC_2676374
- Positioned domains: HisKA 149-213 ; HATPase_c 261-369
Cluster members and taxonomy
Representative gene: GCF_000450145#QK3_RS16740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036442095
AssemblyASM3644209v1 · Contighaploid
Genome composition4 193 230 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key