1 Response_reg#1
75-187 aa · 113 aa · 39.4% of protein
Raw token
Response_reg:75:0.00000000000000366:187:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V2E38_RS12495
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_036350045
ClassRRTypeNarLLength287 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036350045#V2E38_RS12495Stable P2CS identifier used across views.
GenomeGCF_036350045Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length287 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 287 aa (58.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa287 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
225-280 aa · 56 aa · 19.5% of protein
Raw token
HTH_LUXR:225:0.00000000000602:280:56:58- Raw architecture: Response_reg:75:0.00000000000000366:187:114:111#HTH_LUXR:225:0.00000000000602:280:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036350045::NZ_JAZDXI010000040.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7318-8181Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV2E38_12475RefSeq proteinWP_330524365.1
Context group ID
GCF_036350045::NZ_JAZDXI010000040.1::G00024Context members
V2E38_RS12495
Partner locus tags
V2E38_RS12495
Partner old locus tags
V2E38_12475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330524365.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV2E38_RS12495Primary locus identifier stored in the genes table.
Old locus tagV2E38_12475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAZDXI010000040.1Sequence record reported by the local genomic context database.
Genomic interval7 318-8 181 nt864 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 318-8 181 ntGCF_036350045::NZ_JAZDXI010000040.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036350045::NZ_JAZDXI010000040.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAZDXI010000040.1All displayed genes belong to this local TCS context.
Neighborhood span7 318-8 181 nt864 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 318 nt8 181 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
V2E38_RS12495GCF_036350045#V2E38_RS12495
RRNarLCurrent focus
7 318-8 181 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036350045#V2E38_RS12495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0590076
Simplified PFAM architecture for RROC_0590076
PFAM domain coverage: 168 / 287 aa (58.5%)
1 aa287 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[74-186] | GerE[226-280]
- Domain count: 2
- Matched identifier: RROC_0590076
- Positioned domains: Response_reg 74-186 ; GerE 226-280
Cluster members and taxonomy
Representative gene: GCF_036350045#V2E38_RS12495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_036350045
AssemblyASM3635004v1 · Contighaploid
Genome composition2 749 877 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 12 · RR 23CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key