1 Response_reg#1
6-116 aa · 111 aa · 51.6% of protein
Raw token
Response_reg:6:1.03e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4365_RS16270
Response regulator NarL family
Bacillus wiedmannii · GCF_036217365
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036217365#P4365_RS16270Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 215 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:151:2.08e-24:205:55:58- Raw architecture: Response_reg:6:1.03e-37:116:111:111#HTH_LUXR:151:2.08e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036217365::NZ_JARMNH010000022.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116971-118730Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4365_16255RefSeq proteinWP_000694651.1
Context group ID
GCF_036217365::NZ_JARMNH010000022.1::G00045Context members
P4365_RS16270P4365_RS16275
Partner locus tags
P4365_RS16270P4365_RS16275
Partner old locus tags
P4365_16255P4365_16260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694651.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT3ET70Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT3ET70_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4365_RS16270Primary locus identifier stored in the genes table.
Old locus tagP4365_16255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMNH010000022.1Sequence record reported by the local genomic context database.
Genomic interval116 971-117 618 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span116 971-118 730 ntGCF_036217365::NZ_JARMNH010000022.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036217365::NZ_JARMNH010000022.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMNH010000022.1All displayed genes belong to this local TCS context.
Neighborhood span116 971-118 730 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 971 nt118 730 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4365_RS16270GCF_036217365#P4365_RS16270
RRNarLCurrent focus
116 971-117 618 nt · Reverse (-)
P4365_RS16275GCF_036217365#P4365_RS16275
HKClassic
117 633-118 730 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS10425Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906778
Simplified PFAM architecture for RROC_1906778
PFAM domain coverage: 167 / 215 aa (77.7%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1906778
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS10425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_036217365
AssemblyASM3621736v1 · Scaffoldhaploid
Genome composition5 745 669 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 120 · HK 63 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key