1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:4.2e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4365_RS10000
Response regulator OmpR family
Bacillus wiedmannii · GCF_036217365
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036217365#P4365_RS10000Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 229 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.9% of protein
Raw token
Trans_reg_C:153:1.23e-29:225:76:77- Raw architecture: Response_reg:5:4.2e-36:114:111:111#Trans_reg_C:153:1.23e-29:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036217365::NZ_JARMNH010000011.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span253134-255670Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4365_10005RefSeq proteinWP_088093593.1
Context group ID
GCF_036217365::NZ_JARMNH010000011.1::G00020Context members
P4365_RS09995P4365_RS10000
Partner locus tags
P4365_RS09995P4365_RS10000
Partner old locus tags
P4365_10000P4365_10005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088093593.1Primary protein accession used for annex mappings.
UniProt accessionA0A242YWT8Primary UniProt accession resolved in the annex database.
UniProt IDA0A242YWT8_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4365_RS10000Primary locus identifier stored in the genes table.
Old locus tagP4365_10005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMNH010000011.1Sequence record reported by the local genomic context database.
Genomic interval254 981-255 670 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span253 134-255 670 ntGCF_036217365::NZ_JARMNH010000011.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036217365::NZ_JARMNH010000011.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMNH010000011.1All displayed genes belong to this local TCS context.
Neighborhood span253 134-255 670 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
253 134 nt255 670 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4365_RS09995GCF_036217365#P4365_RS09995
HKClassic
253 134-254 984 nt · Reverse (-)
P4365_RS10000GCF_036217365#P4365_RS10000
RROmpRCurrent focus
254 981-255 670 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002147065#BK730_RS30695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1256911
Simplified PFAM architecture for RROC_1256911
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1256911
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_002147065#BK730_RS30695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_036217365
AssemblyASM3621736v1 · Scaffoldhaploid
Genome composition5 745 669 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 120 · HK 63 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key