1 GAF_3#1
237-361 aa · 125 aa · 21.2% of protein
Raw token
GAF_3:237:0.0000000575:361:128:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4365_RS08400
Histidine kinase, Classic
Bacillus wiedmannii · GCF_036217365
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036217365#P4365_RS08400Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAF_3His_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage308 / 589 aa (52.3%)Merged over positioned domains only.
Domain description1 GAF_3,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
375-453 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:375:8.26e-30:453:80:803 HATPase_c#3
473-576 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:473:0.00000000000211:576:108:109- Raw architecture: GAF_3:237:0.0000000575:361:128:129#His_kinase:375:8.26e-30:453:80:80#HATPase_c:473:0.00000000000211:576:108:109
- Domain description: 1 GAF_3,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036217365::NZ_JARMNH010000010.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58435-60922Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4365_08400RefSeq proteinWP_088092155.1
Context group ID
GCF_036217365::NZ_JARMNH010000010.1::G00014Context members
P4365_RS08400P4365_RS08405
Partner locus tags
P4365_RS08400P4365_RS08405
Partner old locus tags
P4365_08400P4365_08405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088092155.1Primary protein accession used for annex mappings.
UniProt accessionA0A242ZNK4Primary UniProt accession resolved in the annex database.
UniProt IDA0A242ZNK4_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4365_RS08400Primary locus identifier stored in the genes table.
Old locus tagP4365_08400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMNH010000010.1Sequence record reported by the local genomic context database.
Genomic interval58 435-60 204 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 435-60 922 ntGCF_036217365::NZ_JARMNH010000010.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036217365::NZ_JARMNH010000010.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMNH010000010.1All displayed genes belong to this local TCS context.
Neighborhood span58 435-60 922 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 435 nt60 922 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4365_RS08400GCF_036217365#P4365_RS08400
HKClassicCurrent focus
58 435-60 204 nt · Forward (+)
P4365_RS08405GCF_036217365#P4365_RS08405
RRLytTR
60 182-60 922 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002147065#BK730_RS03040Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + GAF + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1115708
Simplified PFAM architecture for HKOC_1115708
PFAM domain coverage: 485 / 589 aa (82.3%)
1 aa589 aa
5TM-5TMR_LYTGAFHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + GAF + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[26-204] | GAF[237-359] | His_kinase[375-453] | HATPase_c[473-576]
- Domain count: 4
- Matched identifier: HKOC_1115708
- Positioned domains: 5TM-5TMR_LYT 26-204 ; GAF 237-359 ; His_kinase 375-453 ; HATPase_c 473-576
Cluster members and taxonomy
Representative gene: GCF_002147065#BK730_RS03040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_036217365
AssemblyASM3621736v1 · Scaffoldhaploid
Genome composition5 745 669 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 120 · HK 63 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key