1 Response_reg#1
4-114 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:4:1.31e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U96_RS05425
Response regulator OmpR family
Bacillus mycoides · GCF_036212265
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036212265#P4U96_RS05425Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:3.55e-27:220:76:77- Raw architecture: Response_reg:4:1.31e-34:114:111:111#Trans_reg_C:147:3.55e-27:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036212265::NZ_JARMDH010000008.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157356-159394Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U96_05430RefSeq proteinWP_002185294.1
Context group ID
GCF_036212265::NZ_JARMDH010000008.1::G00020Context members
P4U96_RS05420P4U96_RS05425
Partner locus tags
P4U96_RS05420P4U96_RS05425
Partner old locus tags
P4U96_05425P4U96_05430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002185294.1Primary protein accession used for annex mappings.
UniProt accessionR8CGR5Primary UniProt accession resolved in the annex database.
UniProt IDR8CGR5_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U96_RS05425Primary locus identifier stored in the genes table.
Old locus tagP4U96_05430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMDH010000008.1Sequence record reported by the local genomic context database.
Genomic interval158 720-159 394 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span157 356-159 394 ntGCF_036212265::NZ_JARMDH010000008.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036212265::NZ_JARMDH010000008.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMDH010000008.1All displayed genes belong to this local TCS context.
Neighborhood span157 356-159 394 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 356 nt159 394 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U96_RS05420GCF_036212265#P4U96_RS05420
HKClassic
157 356-158 723 nt · Reverse (-)
P4U96_RS05425GCF_036212265#P4U96_RS05425
RROmpRCurrent focus
158 720-159 394 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS15070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528475
Simplified PFAM architecture for RROC_1528475
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1528475
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS15070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036212265
AssemblyASM3621226v1 · Scaffoldhaploid
Genome composition5 864 245 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 70 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key