1 Response_reg#1
1-86 aa · 86 aa · 45.7% of protein
Raw token
Response_reg:1:7.58e-28:86:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U35_RS26805
Response regulator NarL family
Bacillus mycoides · GCF_036211545
ClassRRTypeNarLLength188 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211545#P4U35_RS26805Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length188 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 188 aa (75.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa188 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
127-182 aa · 56 aa · 29.8% of protein
Raw token
HTH_LUXR:127:1.23e-16:182:56:58- Raw architecture: Response_reg:1:7.58e-28:86:86:111#HTH_LUXR:127:1.23e-16:182:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211545::NZ_JARMBU010000035.1::G00076
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13817-14384Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U35_26740RefSeq proteinWP_328059528.1
Context group ID
GCF_036211545::NZ_JARMBU010000035.1::G00076Context members
P4U35_RS26805
Partner locus tags
P4U35_RS26805
Partner old locus tags
P4U35_26740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328059528.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U35_RS26805Primary locus identifier stored in the genes table.
Old locus tagP4U35_26740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBU010000035.1Sequence record reported by the local genomic context database.
Genomic interval13 817-14 384 nt568 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 817-14 384 ntGCF_036211545::NZ_JARMBU010000035.1::G00076
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211545::NZ_JARMBU010000035.1::G00076Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBU010000035.1All displayed genes belong to this local TCS context.
Neighborhood span13 817-14 384 nt568 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 817 nt14 384 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U35_RS26805GCF_036211545#P4U35_RS26805
RRNarLCurrent focus
13 817-14 384 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS25690Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c + Response_reg + GerE3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0585417
Simplified PFAM architecture for RROC_0585417
PFAM domain coverage: 229 / 291 aa (78.7%)
1 aa291 aa
HATPase_cResponse_regGerE
- Simplified architecture: HATPase_c + Response_reg + GerE
- Raw architecture: HATPase_c[4-67] | Response_reg[78-188] | GerE[231-284]
- Domain count: 3
- Matched identifier: RROC_0585417
- Positioned domains: HATPase_c 4-67 ; HATPase_c 4-67 ; Response_reg 78-188 ; Response_reg 78-188 ; GerE 231-284 ; GerE 231-284
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS25690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211545
AssemblyASM3621154v1 · Scaffoldhaploid
Genome composition5 565 022 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key