1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:2.5e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U35_RS12125
Response regulator OmpR family
Bacillus mycoides · GCF_036211545
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211545#P4U35_RS12125Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 215 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
140-210 aa · 71 aa · 33.0% of protein
Raw token
Trans_reg_C:140:4.15e-28:210:76:77- Raw architecture: Response_reg:3:2.5e-34:112:111:111#Trans_reg_C:140:4.15e-28:210:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211545::NZ_JARMBU010000009.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span263106-265122Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U35_12090RefSeq proteinWP_002168205.1
Context group ID
GCF_036211545::NZ_JARMBU010000009.1::G00041Context members
P4U35_RS12125P4U35_RS12130
Partner locus tags
P4U35_RS12125P4U35_RS12130
Partner old locus tags
P4U35_12090P4U35_12095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002168205.1Primary protein accession used for annex mappings.
UniProt accessionA0A243A7J0Primary UniProt accession resolved in the annex database.
UniProt IDA0A243A7J0_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U35_RS12125Primary locus identifier stored in the genes table.
Old locus tagP4U35_12090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBU010000009.1Sequence record reported by the local genomic context database.
Genomic interval263 106-263 753 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span263 106-265 122 ntGCF_036211545::NZ_JARMBU010000009.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211545::NZ_JARMBU010000009.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBU010000009.1All displayed genes belong to this local TCS context.
Neighborhood span263 106-265 122 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
263 106 nt265 122 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U35_RS12125GCF_036211545#P4U35_RS12125
RROmpRCurrent focus
263 106-263 753 nt · Forward (+)
P4U35_RS12130GCF_036211545#P4U35_RS12130
HKClassic
263 746-265 122 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS12390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906481
Simplified PFAM architecture for RROC_1906481
PFAM domain coverage: 180 / 215 aa (83.7%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1906481
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS12390
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 73 total members. Page 1 / 2.
GCF_000003925#BMYCO0001_RS12390 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211545
AssemblyASM3621154v1 · Scaffoldhaploid
Genome composition5 565 022 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key