1 HAMP#1
319-386 aa · 68 aa · 10.9% of protein
Raw token
HAMP:319:0.0000000000000283:386:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U35_RS03585
Histidine kinase, Classic
Bacillus mycoides · GCF_036211545
ClassHKTypeClassicLength625 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211545#P4U35_RS03585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length625 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 625 aa (39.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa625 aa
Domain-by-domain annotation3 items
2 HisKA#2
406-470 aa · 65 aa · 10.4% of protein
Raw token
HisKA:406:0.0000000000000143:470:65:643 HATPase_c#3
514-624 aa · 111 aa · 17.8% of protein
Raw token
HATPase_c:514:6.84e-23:624:113:109- Raw architecture: HAMP:319:0.0000000000000283:386:68:69#HisKA:406:0.0000000000000143:470:65:64#HATPase_c:514:6.84e-23:624:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211545::NZ_JARMBU010000003.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span352774-355337Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U35_03565RefSeq proteinWP_033734305.1
Context group ID
GCF_036211545::NZ_JARMBU010000003.1::G00011Context members
P4U35_RS03585P4U35_RS03590
Partner locus tags
P4U35_RS03585P4U35_RS03590
Partner old locus tags
P4U35_03565P4U35_03570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033734305.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6Z760Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6Z760_BACMYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U35_RS03585Primary locus identifier stored in the genes table.
Old locus tagP4U35_03565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBU010000003.1Sequence record reported by the local genomic context database.
Genomic interval352 774-354 651 nt1 878 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span352 774-355 337 ntGCF_036211545::NZ_JARMBU010000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211545::NZ_JARMBU010000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBU010000003.1All displayed genes belong to this local TCS context.
Neighborhood span352 774-355 337 nt2 564 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
352 774 nt355 337 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U35_RS03585GCF_036211545#P4U35_RS03585
HKClassicCurrent focus
352 774-354 651 nt · Reverse (-)
P4U35_RS03590GCF_036211545#P4U35_RS03590
RROmpR
354 648-355 337 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS21755Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0959341
Simplified PFAM architecture for HKOC_0959341
PFAM domain coverage: 226 / 625 aa (36.2%)
1 aa625 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[337-386] | HisKA[406-470] | HATPase_c[514-624]
- Domain count: 3
- Matched identifier: HKOC_0959341
- Positioned domains: HAMP 337-386 ; HisKA 406-470 ; HATPase_c 514-624
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS21755
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 16 over 16 total members. Page 1 / 1.
GCF_000003925#BMYCO0001_RS21755 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211545
AssemblyASM3621154v1 · Scaffoldhaploid
Genome composition5 565 022 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key