1 Response_reg#1
1-82 aa · 82 aa · 100.0% of protein
Raw token
Response_reg:1:2.23e-26:82:82:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U55_RS28450
Response regulator, CheY family
Bacillus mycoides · GCF_036211485
ClassRRTypeCheYLength82 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211485#P4U55_RS28450Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length82 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage82 / 82 aa (100.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa82 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:2.23e-26:82:82:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211485::NZ_JARMBT010000057.1::G00078
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span246-493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U55_28380RefSeq proteinWP_328016233.1
Context group ID
GCF_036211485::NZ_JARMBT010000057.1::G00078Context members
P4U55_RS28450
Partner locus tags
P4U55_RS28450
Partner old locus tags
P4U55_28380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328016233.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U55_RS28450Primary locus identifier stored in the genes table.
Old locus tagP4U55_28380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBT010000057.1Sequence record reported by the local genomic context database.
Genomic interval246-493 nt248 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span246-493 ntGCF_036211485::NZ_JARMBT010000057.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211485::NZ_JARMBT010000057.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBT010000057.1All displayed genes belong to this local TCS context.
Neighborhood span246-493 nt248 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
246 nt493 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U55_RS28450GCF_036211485#P4U55_RS28450
RRCheYCurrent focus
246-493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS25690Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c + Response_reg + GerE3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0585417
Simplified PFAM architecture for RROC_0585417
PFAM domain coverage: 229 / 291 aa (78.7%)
1 aa291 aa
HATPase_cResponse_regGerE
- Simplified architecture: HATPase_c + Response_reg + GerE
- Raw architecture: HATPase_c[4-67] | Response_reg[78-188] | GerE[231-284]
- Domain count: 3
- Matched identifier: RROC_0585417
- Positioned domains: HATPase_c 4-67 ; HATPase_c 4-67 ; Response_reg 78-188 ; Response_reg 78-188 ; GerE 231-284 ; GerE 231-284
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS25690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211485
AssemblyASM3621148v1 · Scaffoldhaploid
Genome composition5 584 016 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key