1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:4.96e-19:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U55_RS25235
Response regulator, unclassified
Bacillus mycoides · GCF_036211485
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211485#P4U55_RS25235Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 225 aa (50.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:4.96e-19:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211485::NZ_JARMBT010000034.1::G00068
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44332-45009Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U55_25190RefSeq proteinWP_003187680.1
Context group ID
GCF_036211485::NZ_JARMBT010000034.1::G00068Context members
P4U55_RS25235
Partner locus tags
P4U55_RS25235
Partner old locus tags
P4U55_25190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003187680.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6Z9P6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6Z9P6_BACMYDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U55_RS25235Primary locus identifier stored in the genes table.
Old locus tagP4U55_25190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBT010000034.1Sequence record reported by the local genomic context database.
Genomic interval44 332-45 009 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 332-45 009 ntGCF_036211485::NZ_JARMBT010000034.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211485::NZ_JARMBT010000034.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBT010000034.1All displayed genes belong to this local TCS context.
Neighborhood span44 332-45 009 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 332 nt45 009 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U55_RS25235GCF_036211485#P4U55_RS25235
RRunclassifiedCurrent focus
44 332-45 009 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS04300Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462541
Simplified PFAM architecture for RROC_1462541
PFAM domain coverage: 177 / 225 aa (78.7%)
1 aa225 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[4-115] | HTH_64[158-222]
- Domain count: 2
- Matched identifier: RROC_1462541
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_64 158-222 ; HTH_64 158-222
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS04300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211485
AssemblyASM3621148v1 · Scaffoldhaploid
Genome composition5 584 016 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key