1 HAMP#1
58-126 aa · 69 aa · 19.2% of protein
Raw token
HAMP:58:0.00000000283:126:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U55_RS18920
Histidine kinase, Classic
Bacillus mycoides · GCF_036211485
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211485#P4U55_RS18920Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 359 aa (64.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-201 aa · 64 aa · 17.8% of protein
Raw token
HisKA:138:0.00000000000002:201:64:643 HATPase_c#3
250-348 aa · 99 aa · 27.6% of protein
Raw token
HATPase_c:250:8.58e-16:348:99:109- Raw architecture: HAMP:58:0.00000000283:126:69:69#HisKA:138:0.00000000000002:201:64:64#HATPase_c:250:8.58e-16:348:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211485::NZ_JARMBT010000018.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10376-12138Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U55_18885RefSeq proteinWP_033734466.1
Context group ID
GCF_036211485::NZ_JARMBT010000018.1::G00046Context members
P4U55_RS18920P4U55_RS18925
Partner locus tags
P4U55_RS18920P4U55_RS18925
Partner old locus tags
P4U55_18885P4U55_18890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033734466.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6ZE47Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6ZE47_BACMYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U55_RS18920Primary locus identifier stored in the genes table.
Old locus tagP4U55_18885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBT010000018.1Sequence record reported by the local genomic context database.
Genomic interval10 376-11 455 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 376-12 138 ntGCF_036211485::NZ_JARMBT010000018.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211485::NZ_JARMBT010000018.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBT010000018.1All displayed genes belong to this local TCS context.
Neighborhood span10 376-12 138 nt1 763 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 376 nt12 138 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U55_RS18920GCF_036211485#P4U55_RS18920
HKClassicCurrent focus
10 376-11 455 nt · Reverse (-)
P4U55_RS18925GCF_036211485#P4U55_RS18925
RROmpR
11 452-12 138 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26360Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2752975
Simplified PFAM architecture for HKOC_2752975
PFAM domain coverage: 210 / 359 aa (58.5%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[83-125] | HisKA[138-201] | HATPase_c[251-353]
- Domain count: 3
- Matched identifier: HKOC_2752975
- Positioned domains: HAMP 83-125 ; HisKA 138-201 ; HATPase_c 251-353
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211485
AssemblyASM3621148v1 · Scaffoldhaploid
Genome composition5 584 016 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key