1 HAMP#1
183-252 aa · 70 aa · 13.9% of protein
Raw token
HAMP:183:0.00000000000000191:252:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U46_RS21350
Histidine kinase, Classic
Bacillus mycoides · GCF_036211445
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211445#P4U46_RS21350Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 502 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
277-342 aa · 66 aa · 13.1% of protein
Raw token
HisKA:277:0.000000000000303:342:66:643 HATPase_c#3
388-501 aa · 114 aa · 22.7% of protein
Raw token
HATPase_c:388:1.88e-16:501:116:109- Raw architecture: HAMP:183:0.00000000000000191:252:70:69#HisKA:277:0.000000000000303:342:66:64#HATPase_c:388:1.88e-16:501:116:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211445::NZ_JARMBR010000031.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41152-43360Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U46_21295RefSeq proteinWP_328058818.1
Context group ID
GCF_036211445::NZ_JARMBR010000031.1::G00051Context members
P4U46_RS21345P4U46_RS21350
Partner locus tags
P4U46_RS21345P4U46_RS21350
Partner old locus tags
P4U46_21290P4U46_21295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328058818.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U46_RS21350Primary locus identifier stored in the genes table.
Old locus tagP4U46_21295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBR010000031.1Sequence record reported by the local genomic context database.
Genomic interval41 852-43 360 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 152-43 360 ntGCF_036211445::NZ_JARMBR010000031.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211445::NZ_JARMBR010000031.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBR010000031.1All displayed genes belong to this local TCS context.
Neighborhood span41 152-43 360 nt2 209 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 152 nt43 360 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U46_RS21345GCF_036211445#P4U46_RS21345
RROmpR
41 152-41 838 nt · Forward (+)
P4U46_RS21350GCF_036211445#P4U46_RS21350
HKClassicCurrent focus
41 852-43 360 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211445#P4U46_RS21350The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1466750
Simplified PFAM architecture for HKOC_1466750
PFAM domain coverage: 227 / 502 aa (45.2%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[201-252] | HisKA[278-342] | HATPase_c[391-500]
- Domain count: 3
- Matched identifier: HKOC_1466750
- Positioned domains: HAMP 201-252 ; HisKA 278-342 ; HATPase_c 391-500
Cluster members and taxonomy
Representative gene: GCF_036211445#P4U46_RS21350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211445
AssemblyASM3621144v1 · Scaffoldhaploid
Genome composition5 855 952 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key