1 HAMP#1
41-109 aa · 69 aa · 19.6% of protein
Raw token
HAMP:41:0.000000000771:109:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U46_RS01490
Histidine kinase, Classic
Bacillus mycoides · GCF_036211445
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211445#P4U46_RS01490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 352 aa (70.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 19.3% of protein
Raw token
HisKA:120:1.03e-17:187:68:643 HATPase_c#3
238-347 aa · 110 aa · 31.3% of protein
Raw token
HATPase_c:238:8.96e-25:347:110:109- Raw architecture: HAMP:41:0.000000000771:109:69:69#HisKA:120:1.03e-17:187:68:64#HATPase_c:238:8.96e-25:347:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211445::NZ_JARMBR010000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7052-8820Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U46_01485RefSeq proteinWP_090835550.1
Context group ID
GCF_036211445::NZ_JARMBR010000002.1::G00002Context members
P4U46_RS01485P4U46_RS01490
Partner locus tags
P4U46_RS01485P4U46_RS01490
Partner old locus tags
P4U46_01480P4U46_01485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_090835550.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U46_RS01490Primary locus identifier stored in the genes table.
Old locus tagP4U46_01485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMBR010000002.1Sequence record reported by the local genomic context database.
Genomic interval7 762-8 820 nt1 059 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 052-8 820 ntGCF_036211445::NZ_JARMBR010000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211445::NZ_JARMBR010000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMBR010000002.1All displayed genes belong to this local TCS context.
Neighborhood span7 052-8 820 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 052 nt8 820 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U46_RS01485GCF_036211445#P4U46_RS01485
RROmpR
7 052-7 765 nt · Forward (+)
P4U46_RS01490GCF_036211445#P4U46_RS01490
HKClassicCurrent focus
7 762-8 820 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211445#P4U46_RS01490The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2791503
Simplified PFAM architecture for HKOC_2791503
PFAM domain coverage: 176 / 352 aa (50.0%)
1 aa352 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[121-186] | HATPase_c[238-347]
- Domain count: 2
- Matched identifier: HKOC_2791503
- Positioned domains: HisKA 121-186 ; HATPase_c 238-347
Cluster members and taxonomy
Representative gene: GCF_036211445#P4U46_RS01490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036211445
AssemblyASM3621144v1 · Scaffoldhaploid
Genome composition5 855 952 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key