1 HAMP#1
318-385 aa · 68 aa · 10.9% of protein
Raw token
HAMP:318:0.00000000000012:385:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U07_RS00380
Histidine kinase, Classic
Bacillus mycoides · GCF_036210755
ClassHKTypeClassicLength624 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036210755#P4U07_RS00380Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length624 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 624 aa (39.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa624 aa
Domain-by-domain annotation3 items
2 HisKA#2
405-469 aa · 65 aa · 10.4% of protein
Raw token
HisKA:405:0.0000000000000295:469:65:643 HATPase_c#3
513-623 aa · 111 aa · 17.8% of protein
Raw token
HATPase_c:513:3.07e-23:623:112:109- Raw architecture: HAMP:318:0.00000000000012:385:68:69#HisKA:405:0.0000000000000295:469:65:64#HATPase_c:513:3.07e-23:623:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036210755::NZ_JARMAI010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62501-65061Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U07_00380RefSeq proteinWP_131246917.1
Context group ID
GCF_036210755::NZ_JARMAI010000001.1::G00003Context members
P4U07_RS00375P4U07_RS00380
Partner locus tags
P4U07_RS00375P4U07_RS00380
Partner old locus tags
P4U07_00375P4U07_00380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131246917.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U07_RS00380Primary locus identifier stored in the genes table.
Old locus tagP4U07_00380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMAI010000001.1Sequence record reported by the local genomic context database.
Genomic interval63 187-65 061 nt1 875 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span62 501-65 061 ntGCF_036210755::NZ_JARMAI010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036210755::NZ_JARMAI010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMAI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span62 501-65 061 nt2 561 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 501 nt65 061 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U07_RS00375GCF_036210755#P4U07_RS00375
RROmpR
62 501-63 190 nt · Forward (+)
P4U07_RS00380GCF_036210755#P4U07_RS00380
HKClassicCurrent focus
63 187-65 061 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004330345#E0M27_RS19860Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0962244
Simplified PFAM architecture for HKOC_0962244
PFAM domain coverage: 226 / 624 aa (36.2%)
1 aa624 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[336-385] | HisKA[405-469] | HATPase_c[513-623]
- Domain count: 3
- Matched identifier: HKOC_0962244
- Positioned domains: HAMP 336-385 ; HisKA 405-469 ; HATPase_c 513-623
Cluster members and taxonomy
Representative gene: GCF_004330345#E0M27_RS19860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036210755
AssemblyASM3621075v1 · Scaffoldhaploid
Genome composition6 371 162 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 118 · HK 63 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key