1 Response_reg#1
1-64 aa · 64 aa · 34.8% of protein
Raw token
Response_reg:1:1.02e-16:64:64:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U03_RS22420
Response regulator, unclassified
Bacillus mycoides · GCF_036210745
ClassRRTypeunclassifiedLength184 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036210745#P4U03_RS22420Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length184 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage64 / 184 aa (34.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa184 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:1.02e-16:64:64:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036210745::NZ_JARMAJ010000092.1::G00051
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span18542-19096Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U03_22370RefSeq proteinWP_328035460.1
Context group ID
GCF_036210745::NZ_JARMAJ010000092.1::G00051Context members
P4U03_RS22420
Partner locus tags
P4U03_RS22420
Partner old locus tags
P4U03_22370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328035460.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U03_RS22420Primary locus identifier stored in the genes table.
Old locus tagP4U03_22370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMAJ010000092.1Sequence record reported by the local genomic context database.
Genomic interval18 542-19 096 nt555 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 542-19 096 ntGCF_036210745::NZ_JARMAJ010000092.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036210745::NZ_JARMAJ010000092.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMAJ010000092.1All displayed genes belong to this local TCS context.
Neighborhood span18 542-19 096 nt555 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 542 nt19 096 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U03_RS22420GCF_036210745#P4U03_RS22420
RRunclassifiedCurrent focus
18 542-19 096 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS16825Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1020787
Simplified PFAM architecture for RROC_1020787
PFAM domain coverage: 112 / 235 aa (47.7%)
1 aa235 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1020787
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS16825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036210745
AssemblyASM3621074v1 · Scaffoldhaploid
Genome composition6 030 521 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 113 · HK 61 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key