1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.000000000239:414:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U03_RS15420
Histidine kinase, Classic
Bacillus mycoides · GCF_036210745
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036210745#P4U03_RS15420Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 578 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-578 aa · 108 aa · 18.7% of protein
Raw token
HATPase_c:471:5.41e-31:578:108:109- Raw architecture: HisKA:356:0.000000000239:414:59:64#HATPase_c:471:5.41e-31:578:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036210745::NZ_JARMAJ010000056.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40468-42915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U03_15390RefSeq proteinWP_088030989.1
Context group ID
GCF_036210745::NZ_JARMAJ010000056.1::G00034Context members
P4U03_RS15415P4U03_RS15420
Partner locus tags
P4U03_RS15415P4U03_RS15420
Partner old locus tags
P4U03_15385P4U03_15390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088030989.1Primary protein accession used for annex mappings.
UniProt accessionA0A243ANZ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A243ANZ5_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U03_RS15420Primary locus identifier stored in the genes table.
Old locus tagP4U03_15390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMAJ010000056.1Sequence record reported by the local genomic context database.
Genomic interval41 179-42 915 nt1 737 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 468-42 915 ntGCF_036210745::NZ_JARMAJ010000056.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036210745::NZ_JARMAJ010000056.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMAJ010000056.1All displayed genes belong to this local TCS context.
Neighborhood span40 468-42 915 nt2 448 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 468 nt42 915 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U03_RS15415GCF_036210745#P4U03_RS15415
RROmpR
40 468-41 169 nt · Forward (+)
P4U03_RS15420GCF_036210745#P4U03_RS15420
HKClassicCurrent focus
41 179-42 915 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146725#BK732_RS03400Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1173133
Simplified PFAM architecture for HKOC_1173133
PFAM domain coverage: 166 / 578 aa (28.7%)
1 aa578 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-577]
- Domain count: 2
- Matched identifier: HKOC_1173133
- Positioned domains: HisKA 356-414 ; HATPase_c 471-577
Cluster members and taxonomy
Representative gene: GCF_002146725#BK732_RS03400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036210745
AssemblyASM3621074v1 · Scaffoldhaploid
Genome composition6 030 521 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 113 · HK 61 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key