1 Response_reg#1
4-116 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:4:1.96e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U03_RS04235
Response regulator NarL family
Bacillus mycoides · GCF_036210745
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036210745#P4U03_RS04235Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
139-194 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:139:6.09e-20:194:56:58- Raw architecture: Response_reg:4:1.96e-26:116:113:111#HTH_LUXR:139:6.09e-20:194:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036210745::NZ_JARMAJ010000012.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72340-74066Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U03_04230RefSeq proteinWP_088031711.1
Context group ID
GCF_036210745::NZ_JARMAJ010000012.1::G00010Context members
P4U03_RS04235P4U03_RS04240
Partner locus tags
P4U03_RS04235P4U03_RS04240
Partner old locus tags
P4U03_04230P4U03_04235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088031711.1Primary protein accession used for annex mappings.
UniProt accessionA0A243AI51Primary UniProt accession resolved in the annex database.
UniProt IDA0A243AI51_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U03_RS04235Primary locus identifier stored in the genes table.
Old locus tagP4U03_04230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMAJ010000012.1Sequence record reported by the local genomic context database.
Genomic interval72 340-72 942 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 340-74 066 ntGCF_036210745::NZ_JARMAJ010000012.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036210745::NZ_JARMAJ010000012.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMAJ010000012.1All displayed genes belong to this local TCS context.
Neighborhood span72 340-74 066 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 340 nt74 066 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U03_RS04235GCF_036210745#P4U03_RS04235
RRNarLCurrent focus
72 340-72 942 nt · Reverse (-)
P4U03_RS04240GCF_036210745#P4U03_RS04240
HKClassic
72 939-74 066 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146725#BK732_RS10825Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2136133
Simplified PFAM architecture for RROC_2136133
PFAM domain coverage: 169 / 200 aa (84.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[139-194]
- Domain count: 2
- Matched identifier: RROC_2136133
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 139-194 ; GerE 139-194
Cluster members and taxonomy
Representative gene: GCF_002146725#BK732_RS10825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036210745
AssemblyASM3621074v1 · Scaffoldhaploid
Genome composition6 030 521 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 113 · HK 61 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key