1 HAMP#1
310-377 aa · 68 aa · 11.0% of protein
Raw token
HAMP:310:0.000000000000582:377:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T67_RS28865
Histidine kinase, Classic
Bacillus mycoides · GCF_036209935
ClassHKTypeClassicLength616 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036209935#P4T67_RS28865Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length616 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 616 aa (38.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa616 aa
Domain-by-domain annotation3 items
2 HisKA#2
397-461 aa · 65 aa · 10.6% of protein
Raw token
HisKA:397:0.000000000000092:461:65:643 HATPase_c#3
509-612 aa · 104 aa · 16.9% of protein
Raw token
HATPase_c:509:3.51e-21:612:105:109- Raw architecture: HAMP:310:0.000000000000582:377:68:69#HisKA:397:0.000000000000092:461:65:64#HATPase_c:509:3.51e-21:612:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036209935::NZ_JARLYS010000094.1::G00067
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span12807-14657Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T67_28805RefSeq proteinWP_328012296.1
Context group ID
GCF_036209935::NZ_JARLYS010000094.1::G00067Context members
P4T67_RS28865
Partner locus tags
P4T67_RS28865
Partner old locus tags
P4T67_28805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328012296.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T67_RS28865Primary locus identifier stored in the genes table.
Old locus tagP4T67_28805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYS010000094.1Sequence record reported by the local genomic context database.
Genomic interval12 807-14 657 nt1 851 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 807-14 657 ntGCF_036209935::NZ_JARLYS010000094.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209935::NZ_JARLYS010000094.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYS010000094.1All displayed genes belong to this local TCS context.
Neighborhood span12 807-14 657 nt1 851 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 807 nt14 657 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4T67_RS28865GCF_036209935#P4T67_RS28865
HKClassicCurrent focus
12 807-14 657 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209935#P4T67_RS28865The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0987903
Simplified PFAM architecture for HKOC_0987903
PFAM domain coverage: 220 / 616 aa (35.7%)
1 aa616 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-377] | HisKA[397-461] | HATPase_c[508-613]
- Domain count: 3
- Matched identifier: HKOC_0987903
- Positioned domains: HAMP 329-377 ; HisKA 397-461 ; HATPase_c 508-613
Cluster members and taxonomy
Representative gene: GCF_036209935#P4T67_RS28865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209935
AssemblyASM3620993v1 · Scaffoldhaploid
Genome composition5 940 240 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key