1 HAMP#1
136-203 aa · 68 aa · 16.3% of protein
Raw token
HAMP:136:0.0000000864:203:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T67_RS22745
Histidine kinase, Classic
Bacillus mycoides · GCF_036209935
ClassHKTypeClassicLength416 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209935#P4T67_RS22745Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length416 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage220 / 416 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa416 aa
Domain-by-domain annotation3 items
2 HisKA#2
215-278 aa · 64 aa · 15.4% of protein
Raw token
HisKA:215:0.00000000000563:278:64:643 HATPase_c#3
326-413 aa · 88 aa · 21.2% of protein
Raw token
HATPase_c:326:0.00000000000293:413:103:109- Raw architecture: HAMP:136:0.0000000864:203:70:69#HisKA:215:0.00000000000563:278:64:64#HATPase_c:326:0.00000000000293:413:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209935::NZ_JARLYS010000047.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21474-23491Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T67_22700RefSeq proteinWP_328011628.1
Context group ID
GCF_036209935::NZ_JARLYS010000047.1::G00055Context members
P4T67_RS22740P4T67_RS22745
Partner locus tags
P4T67_RS22740P4T67_RS22745
Partner old locus tags
P4T67_22695P4T67_22700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328011628.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T67_RS22745Primary locus identifier stored in the genes table.
Old locus tagP4T67_22700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYS010000047.1Sequence record reported by the local genomic context database.
Genomic interval22 241-23 491 nt1 251 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 474-23 491 ntGCF_036209935::NZ_JARLYS010000047.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209935::NZ_JARLYS010000047.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYS010000047.1All displayed genes belong to this local TCS context.
Neighborhood span21 474-23 491 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 474 nt23 491 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T67_RS22740GCF_036209935#P4T67_RS22740
RROmpR
21 474-22 145 nt · Forward (+)
P4T67_RS22745GCF_036209935#P4T67_RS22745
HKClassicCurrent focus
22 241-23 491 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209935#P4T67_RS22745The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2306946
Simplified PFAM architecture for HKOC_2306946
PFAM domain coverage: 197 / 416 aa (47.4%)
1 aa416 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[157-203] | HisKA[215-277] | HATPase_c[326-412]
- Domain count: 3
- Matched identifier: HKOC_2306946
- Positioned domains: HAMP 157-203 ; HisKA 215-277 ; HATPase_c 326-412
Cluster members and taxonomy
Representative gene: GCF_036209935#P4T67_RS22745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209935
AssemblyASM3620993v1 · Scaffoldhaploid
Genome composition5 940 240 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key