1 HAMP#1
67-126 aa · 60 aa · 16.5% of protein
Raw token
HAMP:67:0.000000206:126:60:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T67_RS18895
Histidine kinase, Classic
Bacillus mycoides · GCF_036209935
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209935#P4T67_RS18895Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 364 aa (65.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-204 aa · 68 aa · 18.7% of protein
Raw token
HisKA:137:0.00000000000161:204:68:643 HATPase_c#3
249-360 aa · 112 aa · 30.8% of protein
Raw token
HATPase_c:249:8.71e-25:360:113:109- Raw architecture: HAMP:67:0.000000206:126:60:69#HisKA:137:0.00000000000161:204:68:64#HATPase_c:249:8.71e-25:360:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209935::NZ_JARLYS010000033.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9782-11567Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T67_18855RefSeq proteinWP_215589856.1
Context group ID
GCF_036209935::NZ_JARLYS010000033.1::G00048Context members
P4T67_RS18890P4T67_RS18895
Partner locus tags
P4T67_RS18890P4T67_RS18895
Partner old locus tags
P4T67_18850P4T67_18855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215589856.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T67_RS18895Primary locus identifier stored in the genes table.
Old locus tagP4T67_18855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYS010000033.1Sequence record reported by the local genomic context database.
Genomic interval10 473-11 567 nt1 095 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 782-11 567 ntGCF_036209935::NZ_JARLYS010000033.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209935::NZ_JARLYS010000033.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYS010000033.1All displayed genes belong to this local TCS context.
Neighborhood span9 782-11 567 nt1 786 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 782 nt11 567 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T67_RS18890GCF_036209935#P4T67_RS18890
RROmpR
9 782-10 480 nt · Forward (+)
P4T67_RS18895GCF_036209935#P4T67_RS18895
HKClassicCurrent focus
10 473-11 567 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018741165#EXW39_RS15360Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2727350
Simplified PFAM architecture for HKOC_2727350
PFAM domain coverage: 222 / 364 aa (61.0%)
1 aa364 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[81-125] | HisKA[138-203] | HATPase_c[249-359]
- Domain count: 3
- Matched identifier: HKOC_2727350
- Positioned domains: HAMP 81-125 ; HisKA 138-203 ; HATPase_c 249-359
Cluster members and taxonomy
Representative gene: GCF_018741165#EXW39_RS15360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209935
AssemblyASM3620993v1 · Scaffoldhaploid
Genome composition5 940 240 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key