1 HAMP#1
88-158 aa · 71 aa · 18.6% of protein
Raw token
HAMP:88:0.000000000108:158:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T67_RS15100
Histidine kinase, Classic
Bacillus mycoides · GCF_036209935
ClassHKTypeClassicLength382 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209935#P4T67_RS15100Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length382 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 382 aa (64.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa382 aa
Domain-by-domain annotation3 items
2 HisKA#2
162-229 aa · 68 aa · 17.8% of protein
Raw token
HisKA:162:0.0000000000422:229:68:643 HATPase_c#3
270-378 aa · 109 aa · 28.5% of protein
Raw token
HATPase_c:270:1.29e-31:378:109:109- Raw architecture: HAMP:88:0.000000000108:158:71:69#HisKA:162:0.0000000000422:229:68:64#HATPase_c:270:1.29e-31:378:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209935::NZ_JARLYS010000028.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38845-40676Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T67_15060RefSeq proteinWP_328011042.1
Context group ID
GCF_036209935::NZ_JARLYS010000028.1::G00035Context members
P4T67_RS15100P4T67_RS15105
Partner locus tags
P4T67_RS15100P4T67_RS15105
Partner old locus tags
P4T67_15060P4T67_15065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328011042.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T67_RS15100Primary locus identifier stored in the genes table.
Old locus tagP4T67_15060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYS010000028.1Sequence record reported by the local genomic context database.
Genomic interval38 845-39 993 nt1 149 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 845-40 676 ntGCF_036209935::NZ_JARLYS010000028.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209935::NZ_JARLYS010000028.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYS010000028.1All displayed genes belong to this local TCS context.
Neighborhood span38 845-40 676 nt1 832 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 845 nt40 676 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T67_RS15100GCF_036209935#P4T67_RS15100
HKClassicCurrent focus
38 845-39 993 nt · Reverse (-)
P4T67_RS15105GCF_036209935#P4T67_RS15105
RROmpR
39 993-40 676 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209935#P4T67_RS15100The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2595787
Simplified PFAM architecture for HKOC_2595787
PFAM domain coverage: 224 / 382 aa (58.6%)
1 aa382 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[108-157] | HisKA[163-228] | HATPase_c[271-378]
- Domain count: 3
- Matched identifier: HKOC_2595787
- Positioned domains: HAMP 108-157 ; HisKA 163-228 ; HATPase_c 271-378
Cluster members and taxonomy
Representative gene: GCF_036209935#P4T67_RS15100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209935
AssemblyASM3620993v1 · Scaffoldhaploid
Genome composition5 940 240 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key