1 Response_reg#1
4-116 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:4:2.98e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T67_RS11980
Response regulator NarL family
Bacillus mycoides · GCF_036209935
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209935#P4T67_RS11980Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-204 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:150:6.66e-25:204:55:58- Raw architecture: Response_reg:4:2.98e-34:116:113:111#HTH_LUXR:150:6.66e-25:204:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209935::NZ_JARLYS010000020.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95245-97720Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T67_11965RefSeq proteinWP_002188290.1
Context group ID
GCF_036209935::NZ_JARLYS010000020.1::G00028Context members
P4T67_RS11980P4T67_RS11985
Partner locus tags
P4T67_RS11980P4T67_RS11985
Partner old locus tags
P4T67_11965P4T67_11970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002188290.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T67_RS11980Primary locus identifier stored in the genes table.
Old locus tagP4T67_11965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYS010000020.1Sequence record reported by the local genomic context database.
Genomic interval95 245-95 886 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span95 245-97 720 ntGCF_036209935::NZ_JARLYS010000020.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209935::NZ_JARLYS010000020.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYS010000020.1All displayed genes belong to this local TCS context.
Neighborhood span95 245-97 720 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 245 nt97 720 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T67_RS11980GCF_036209935#P4T67_RS11980
RRNarLCurrent focus
95 245-95 886 nt · Reverse (-)
P4T67_RS11985GCF_036209935#P4T67_RS11985
HKClassic
95 888-97 720 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002976445#CQ058_RS20180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1967078
Simplified PFAM architecture for RROC_1967078
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1967078
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_002976445#CQ058_RS20180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209935
AssemblyASM3620993v1 · Scaffoldhaploid
Genome composition5 940 240 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key