1 HisKA#1
255-321 aa · 67 aa · 14.0% of protein
Raw token
HisKA:255:0.00000000113:321:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T67_RS05690
Histidine kinase, Classic
Bacillus mycoides · GCF_036209935
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209935#P4T67_RS05690Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 477 aa (37.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa477 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
366-476 aa · 111 aa · 23.3% of protein
Raw token
HATPase_c:366:1.6e-20:476:112:109- Raw architecture: HisKA:255:0.00000000113:321:67:64#HATPase_c:366:1.6e-20:476:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209935::NZ_JARLYS010000009.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35995-38071Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T67_05675RefSeq proteinWP_328009987.1
Context group ID
GCF_036209935::NZ_JARLYS010000009.1::G00015Context members
P4T67_RS05690P4T67_RS05695
Partner locus tags
P4T67_RS05690P4T67_RS05695
Partner old locus tags
P4T67_05675P4T67_05680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328009987.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T67_RS05690Primary locus identifier stored in the genes table.
Old locus tagP4T67_05675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYS010000009.1Sequence record reported by the local genomic context database.
Genomic interval35 995-37 428 nt1 434 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 995-38 071 ntGCF_036209935::NZ_JARLYS010000009.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209935::NZ_JARLYS010000009.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYS010000009.1All displayed genes belong to this local TCS context.
Neighborhood span35 995-38 071 nt2 077 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 995 nt38 071 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T67_RS05690GCF_036209935#P4T67_RS05690
HKClassicCurrent focus
35 995-37 428 nt · Reverse (-)
P4T67_RS05695GCF_036209935#P4T67_RS05695
RROmpR
37 406-38 071 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209935#P4T67_RS05690The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1651650
Simplified PFAM architecture for HKOC_1651650
PFAM domain coverage: 174 / 477 aa (36.5%)
1 aa477 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[256-320] | HATPase_c[367-475]
- Domain count: 2
- Matched identifier: HKOC_1651650
- Positioned domains: HisKA 256-320 ; HATPase_c 367-475
Cluster members and taxonomy
Representative gene: GCF_036209935#P4T67_RS05690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209935
AssemblyASM3620993v1 · Scaffoldhaploid
Genome composition5 940 240 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key