1 HAMP#1
319-386 aa · 68 aa · 10.9% of protein
Raw token
HAMP:319:0.0000000000000369:386:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T62_RS05660
Histidine kinase, Classic
Bacillus mycoides · GCF_036209775
ClassHKTypeClassicLength625 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209775#P4T62_RS05660Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length625 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 625 aa (39.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa625 aa
Domain-by-domain annotation3 items
2 HisKA#2
406-470 aa · 65 aa · 10.4% of protein
Raw token
HisKA:406:0.0000000000000162:470:65:643 HATPase_c#3
514-624 aa · 111 aa · 17.8% of protein
Raw token
HATPase_c:514:1.07e-22:624:113:109- Raw architecture: HAMP:319:0.0000000000000369:386:68:69#HisKA:406:0.0000000000000162:470:65:64#HATPase_c:514:1.07e-22:624:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209775::NZ_JARLYK010000006.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72482-75045Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T62_05655RefSeq proteinWP_088037923.1
Context group ID
GCF_036209775::NZ_JARLYK010000006.1::G00013Context members
P4T62_RS05655P4T62_RS05660
Partner locus tags
P4T62_RS05655P4T62_RS05660
Partner old locus tags
P4T62_05650P4T62_05655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088037923.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T62_RS05660Primary locus identifier stored in the genes table.
Old locus tagP4T62_05655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYK010000006.1Sequence record reported by the local genomic context database.
Genomic interval73 168-75 045 nt1 878 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 482-75 045 ntGCF_036209775::NZ_JARLYK010000006.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209775::NZ_JARLYK010000006.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYK010000006.1All displayed genes belong to this local TCS context.
Neighborhood span72 482-75 045 nt2 564 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 482 nt75 045 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T62_RS05655GCF_036209775#P4T62_RS05655
RROmpR
72 482-73 171 nt · Forward (+)
P4T62_RS05660GCF_036209775#P4T62_RS05660
HKClassicCurrent focus
73 168-75 045 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002118175#S2E19_RS07355Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0959748
Simplified PFAM architecture for HKOC_0959748
PFAM domain coverage: 226 / 625 aa (36.2%)
1 aa625 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[337-386] | HisKA[406-470] | HATPase_c[514-624]
- Domain count: 3
- Matched identifier: HKOC_0959748
- Positioned domains: HAMP 337-386 ; HisKA 406-470 ; HATPase_c 514-624
Cluster members and taxonomy
Representative gene: GCF_002118175#S2E19_RS07355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209775
AssemblyASM3620977v1 · Scaffoldhaploid
Genome composition5 829 485 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key