1 HisKA_3#1
400-464 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:400:2e-18:464:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T62_RS04235
Histidine kinase, Classic
Bacillus mycoides · GCF_036209775
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209775#P4T62_RS04235Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 607 aa (26.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
506-600 aa · 95 aa · 15.7% of protein
Raw token
HATPase_c:506:0.0000000000000287:600:105:109- Raw architecture: HisKA_3:400:2e-18:464:65:68#HATPase_c:506:0.0000000000000287:600:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209775::NZ_JARLYK010000004.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86772-89238Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T62_04235RefSeq proteinWP_088038492.1
Context group ID
GCF_036209775::NZ_JARLYK010000004.1::G00004Context members
P4T62_RS04230P4T62_RS04235
Partner locus tags
P4T62_RS04230P4T62_RS04235
Partner old locus tags
P4T62_04230P4T62_04235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088038492.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T62_RS04235Primary locus identifier stored in the genes table.
Old locus tagP4T62_04235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYK010000004.1Sequence record reported by the local genomic context database.
Genomic interval87 415-89 238 nt1 824 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 772-89 238 ntGCF_036209775::NZ_JARLYK010000004.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209775::NZ_JARLYK010000004.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span86 772-89 238 nt2 467 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 772 nt89 238 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T62_RS04230GCF_036209775#P4T62_RS04230
RRNarL
86 772-87 413 nt · Reverse (-)
P4T62_RS04235GCF_036209775#P4T62_RS04235
HKClassicCurrent focus
87 415-89 238 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002118175#S2E19_RS18810Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1019482
Simplified PFAM architecture for HKOC_1019482
PFAM domain coverage: 160 / 607 aa (26.4%)
1 aa607 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[400-464] | HATPase_c[507-601]
- Domain count: 2
- Matched identifier: HKOC_1019482
- Positioned domains: HisKA_3 400-464 ; HATPase_c 507-601
Cluster members and taxonomy
Representative gene: GCF_002118175#S2E19_RS18810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209775
AssemblyASM3620977v1 · Scaffoldhaploid
Genome composition5 829 485 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key