1 HAMP#1
198-267 aa · 70 aa · 13.5% of protein
Raw token
HAMP:198:0.00000000000000156:267:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T54_RS25340
Histidine kinase, Classic
Bacillus mycoides · GCF_036209745
ClassHKTypeClassicLength517 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209745#P4T54_RS25340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length517 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 517 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa517 aa
Domain-by-domain annotation3 items
2 HisKA#2
292-357 aa · 66 aa · 12.8% of protein
Raw token
HisKA:292:0.000000000000227:357:66:643 HATPase_c#3
403-516 aa · 114 aa · 22.1% of protein
Raw token
HATPase_c:403:2.67e-16:516:116:109- Raw architecture: HAMP:198:0.00000000000000156:267:70:69#HisKA:292:0.000000000000227:357:66:64#HATPase_c:403:2.67e-16:516:116:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209745::NZ_JARLYL010000025.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53854-56107Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T54_25300RefSeq proteinWP_328027603.1
Context group ID
GCF_036209745::NZ_JARLYL010000025.1::G00058Context members
P4T54_RS25340P4T54_RS25345
Partner locus tags
P4T54_RS25340P4T54_RS25345
Partner old locus tags
P4T54_25300P4T54_25305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328027603.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T54_RS25340Primary locus identifier stored in the genes table.
Old locus tagP4T54_25300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYL010000025.1Sequence record reported by the local genomic context database.
Genomic interval53 854-55 407 nt1 554 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 854-56 107 ntGCF_036209745::NZ_JARLYL010000025.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209745::NZ_JARLYL010000025.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYL010000025.1All displayed genes belong to this local TCS context.
Neighborhood span53 854-56 107 nt2 254 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 854 nt56 107 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T54_RS25340GCF_036209745#P4T54_RS25340
HKClassicCurrent focus
53 854-55 407 nt · Reverse (-)
P4T54_RS25345GCF_036209745#P4T54_RS25345
RROmpR
55 421-56 107 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209745#P4T54_RS25340The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1403178
Simplified PFAM architecture for HKOC_1403178
PFAM domain coverage: 227 / 517 aa (43.9%)
1 aa517 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[216-267] | HisKA[293-357] | HATPase_c[406-515]
- Domain count: 3
- Matched identifier: HKOC_1403178
- Positioned domains: HAMP 216-267 ; HisKA 293-357 ; HATPase_c 406-515
Cluster members and taxonomy
Representative gene: GCF_036209745#P4T54_RS25340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209745
AssemblyASM3620974v1 · Scaffoldhaploid
Genome composition6 022 191 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key