1 Response_reg#1
4-115 aa · 112 aa · 51.4% of protein
Raw token
Response_reg:4:2.87e-29:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T54_RS19700
Response regulator NarL family
Bacillus mycoides · GCF_036209745
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209745#P4T54_RS19700Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 218 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-209 aa · 58 aa · 26.6% of protein
Raw token
HTH_LUXR:152:2.12e-22:209:58:58- Raw architecture: Response_reg:4:2.87e-29:115:112:111#HTH_LUXR:152:2.12e-22:209:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209745::NZ_JARLYL010000018.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34859-36705Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T54_19670RefSeq proteinWP_000619338.1
Context group ID
GCF_036209745::NZ_JARLYL010000018.1::G00044Context members
P4T54_RS19700P4T54_RS19705
Partner locus tags
P4T54_RS19700P4T54_RS19705
Partner old locus tags
P4T54_19670P4T54_19675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000619338.1Primary protein accession used for annex mappings.
UniProt accessionR8NP22Primary UniProt accession resolved in the annex database.
UniProt IDR8NP22_BACCXDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T54_RS19700Primary locus identifier stored in the genes table.
Old locus tagP4T54_19670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYL010000018.1Sequence record reported by the local genomic context database.
Genomic interval34 859-35 515 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 859-36 705 ntGCF_036209745::NZ_JARLYL010000018.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209745::NZ_JARLYL010000018.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYL010000018.1All displayed genes belong to this local TCS context.
Neighborhood span34 859-36 705 nt1 847 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 859 nt36 705 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T54_RS19700GCF_036209745#P4T54_RS19700
RRNarLCurrent focus
34 859-35 515 nt · Reverse (-)
P4T54_RS19705GCF_036209745#P4T54_RS19705
HKClassic
35 512-36 705 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS25115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812838
Simplified PFAM architecture for RROC_1812838
PFAM domain coverage: 168 / 218 aa (77.1%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[154-209]
- Domain count: 2
- Matched identifier: RROC_1812838
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 154-209 ; GerE 154-209
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS25115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209745
AssemblyASM3620974v1 · Scaffoldhaploid
Genome composition6 022 191 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key