1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:5.28e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U69_RS00125
Response regulator OmpR family
Bacillus mycoides · GCF_036209645
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209645#P4U69_RS00125Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:1.48e-32:227:77:77- Raw architecture: Response_reg:4:5.28e-36:113:111:111#Trans_reg_C:151:1.48e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209645::NZ_JARLYF010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18004-20149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U69_00125RefSeq proteinWP_002015585.1
Context group ID
GCF_036209645::NZ_JARLYF010000001.1::G00001Context members
P4U69_RS00120P4U69_RS00125
Partner locus tags
P4U69_RS00120P4U69_RS00125
Partner old locus tags
P4U69_00120P4U69_00125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002015585.1Primary protein accession used for annex mappings.
UniProt accessionC2Q1Z6Primary UniProt accession resolved in the annex database.
UniProt IDC2Q1Z6_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U69_RS00125Primary locus identifier stored in the genes table.
Old locus tagP4U69_00125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLYF010000001.1Sequence record reported by the local genomic context database.
Genomic interval19 460-20 149 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 004-20 149 ntGCF_036209645::NZ_JARLYF010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209645::NZ_JARLYF010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLYF010000001.1All displayed genes belong to this local TCS context.
Neighborhood span18 004-20 149 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 004 nt20 149 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U69_RS00120GCF_036209645#P4U69_RS00120
HKClassic
18 004-19 458 nt · Forward (+)
P4U69_RS00125GCF_036209645#P4U69_RS00125
RROmpRCurrent focus
19 460-20 149 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS21525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246903
Simplified PFAM architecture for RROC_1246903
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1246903
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS21525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_036209645
AssemblyASM3620964v1 · Scaffoldhaploid
Genome composition5 908 004 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 72 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key