1 Response_reg#1
5-117 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:5:1.14e-35:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS18905
Response regulator NarL family
Bacillus nitratireducens · GCF_036209205
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS18905Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 215 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-209 aa · 57 aa · 26.5% of protein
Raw token
HTH_LUXR:153:3.2e-25:209:57:58- Raw architecture: Response_reg:5:1.14e-35:117:113:111#HTH_LUXR:153:3.2e-25:209:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000021.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95110-97350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_18860RefSeq proteinWP_097808740.1
Context group ID
GCF_036209205::NZ_JARLXK010000021.1::G00052Context members
P4T56_RS18900P4T56_RS18905
Partner locus tags
P4T56_RS18900P4T56_RS18905
Partner old locus tags
P4T56_18855P4T56_18860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097808740.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS18905Primary locus identifier stored in the genes table.
Old locus tagP4T56_18860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000021.1Sequence record reported by the local genomic context database.
Genomic interval96 703-97 350 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 110-97 350 ntGCF_036209205::NZ_JARLXK010000021.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000021.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000021.1All displayed genes belong to this local TCS context.
Neighborhood span95 110-97 350 nt2 241 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 110 nt97 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS18900GCF_036209205#P4T56_RS18900
HKClassic
95 110-96 681 nt · Forward (+)
P4T56_RS18905GCF_036209205#P4T56_RS18905
RRNarLCurrent focus
96 703-97 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209205#P4T56_RS18905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1925264
Simplified PFAM architecture for RROC_1925264
PFAM domain coverage: 170 / 215 aa (79.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-117] | GerE[153-209]
- Domain count: 2
- Matched identifier: RROC_1925264
- Positioned domains: Response_reg 5-117 ; GerE 153-209
Cluster members and taxonomy
Representative gene: GCF_036209205#P4T56_RS18905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key