1 GAF_3#1
237-361 aa · 125 aa · 21.2% of protein
Raw token
GAF_3:237:0.000000233:361:130:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS18760
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209205
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS18760Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAF_3His_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage308 / 589 aa (52.3%)Merged over positioned domains only.
Domain description1 GAF_3,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
375-453 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:375:2.35e-29:453:80:803 HATPase_c#3
473-576 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:473:0.00000000000206:576:108:109- Raw architecture: GAF_3:237:0.000000233:361:130:129#His_kinase:375:2.35e-29:453:80:80#HATPase_c:473:0.00000000000206:576:108:109
- Domain description: 1 GAF_3,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000021.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60659-63146Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_18715RefSeq proteinWP_097808757.1
Context group ID
GCF_036209205::NZ_JARLXK010000021.1::G00050Context members
P4T56_RS18760P4T56_RS18765
Partner locus tags
P4T56_RS18760P4T56_RS18765
Partner old locus tags
P4T56_18715P4T56_18720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097808757.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS18760Primary locus identifier stored in the genes table.
Old locus tagP4T56_18715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000021.1Sequence record reported by the local genomic context database.
Genomic interval60 659-62 428 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 659-63 146 ntGCF_036209205::NZ_JARLXK010000021.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000021.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000021.1All displayed genes belong to this local TCS context.
Neighborhood span60 659-63 146 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 659 nt63 146 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS18760GCF_036209205#P4T56_RS18760
HKClassicCurrent focus
60 659-62 428 nt · Forward (+)
P4T56_RS18765GCF_036209205#P4T56_RS18765
RRLytTR
62 406-63 146 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209205#P4T56_RS18760The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + GAF + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1118529
Simplified PFAM architecture for HKOC_1118529
PFAM domain coverage: 484 / 589 aa (82.2%)
1 aa589 aa
5TM-5TMR_LYTGAFHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + GAF + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[26-204] | GAF[237-359] | His_kinase[375-453] | HATPase_c[473-575]
- Domain count: 4
- Matched identifier: HKOC_1118529
- Positioned domains: 5TM-5TMR_LYT 26-204 ; GAF 237-359 ; His_kinase 375-453 ; HATPase_c 473-575
Cluster members and taxonomy
Representative gene: GCF_036209205#P4T56_RS18760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key