1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:4.54e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS16425
Response regulator NarL family
Bacillus nitratireducens · GCF_036209205
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS16425Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 211 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 26.1% of protein
Raw token
HTH_LUXR:151:2.17e-24:205:55:58- Raw architecture: Response_reg:6:4.54e-37:116:111:111#HTH_LUXR:151:2.17e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000019.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96331-98078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_16390RefSeq proteinWP_000694634.1
Context group ID
GCF_036209205::NZ_JARLXK010000019.1::G00046Context members
P4T56_RS16425P4T56_RS16430
Partner locus tags
P4T56_RS16425P4T56_RS16430
Partner old locus tags
P4T56_16390P4T56_16395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694634.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6P8N3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6P8N3_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS16425Primary locus identifier stored in the genes table.
Old locus tagP4T56_16390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000019.1Sequence record reported by the local genomic context database.
Genomic interval96 331-96 966 nt636 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 331-98 078 ntGCF_036209205::NZ_JARLXK010000019.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000019.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000019.1All displayed genes belong to this local TCS context.
Neighborhood span96 331-98 078 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 331 nt98 078 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS16425GCF_036209205#P4T56_RS16425
RRNarLCurrent focus
96 331-96 966 nt · Reverse (-)
P4T56_RS16430GCF_036209205#P4T56_RS16430
HKClassic
96 981-98 078 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007676595#FS640_RS18535Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2008251
Simplified PFAM architecture for RROC_2008251
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2008251
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_007676595#FS640_RS18535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key