1 HisKA_3#1
403-467 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:403:8.62e-18:467:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS15270
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209205
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS15270Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 610 aa (24.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
517-603 aa · 87 aa · 14.3% of protein
Raw token
HATPase_c:517:0.0000000000000163:603:97:109- Raw architecture: HisKA_3:403:8.62e-18:467:65:68#HATPase_c:517:0.0000000000000163:603:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000018.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94893-97368Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_15240RefSeq proteinWP_097809956.1
Context group ID
GCF_036209205::NZ_JARLXK010000018.1::G00040Context members
P4T56_RS15265P4T56_RS15270
Partner locus tags
P4T56_RS15265P4T56_RS15270
Partner old locus tags
P4T56_15235P4T56_15240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097809956.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS15270Primary locus identifier stored in the genes table.
Old locus tagP4T56_15240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000018.1Sequence record reported by the local genomic context database.
Genomic interval95 536-97 368 nt1 833 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span94 893-97 368 ntGCF_036209205::NZ_JARLXK010000018.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000018.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000018.1All displayed genes belong to this local TCS context.
Neighborhood span94 893-97 368 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 893 nt97 368 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS15265GCF_036209205#P4T56_RS15265
RRNarL
94 893-95 534 nt · Reverse (-)
P4T56_RS15270GCF_036209205#P4T56_RS15270
HKClassicCurrent focus
95 536-97 368 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209205#P4T56_RS15270The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1007450
Simplified PFAM architecture for HKOC_1007450
PFAM domain coverage: 274 / 610 aa (44.9%)
1 aa610 aa
GAFHisKA_3HATPase_c
- Simplified architecture: GAF + HisKA_3 + HATPase_c
- Raw architecture: GAF[268-384] | HisKA_3[403-467] | HATPase_c[513-604]
- Domain count: 3
- Matched identifier: HKOC_1007450
- Positioned domains: GAF 268-384 ; HisKA_3 403-467 ; HATPase_c 513-604
Cluster members and taxonomy
Representative gene: GCF_036209205#P4T56_RS15270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key