1 HisKA#1
117-169 aa · 53 aa · 16.2% of protein
Raw token
HisKA:117:0.000000217:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS14265
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209205
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS14265Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 328 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-327 aa · 113 aa · 34.5% of protein
Raw token
HATPase_c:215:2.7e-28:327:113:109- Raw architecture: HisKA:117:0.000000217:169:59:64#HATPase_c:215:2.7e-28:327:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000017.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65298-66991Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_14240RefSeq proteinWP_001048189.1
Context group ID
GCF_036209205::NZ_JARLXK010000017.1::G00038Context members
P4T56_RS14265P4T56_RS14270
Partner locus tags
P4T56_RS14265P4T56_RS14270
Partner old locus tags
P4T56_14240P4T56_14245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001048189.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6PG17Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6PG17_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS14265Primary locus identifier stored in the genes table.
Old locus tagP4T56_14240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000017.1Sequence record reported by the local genomic context database.
Genomic interval65 298-66 284 nt987 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 298-66 991 ntGCF_036209205::NZ_JARLXK010000017.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000017.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000017.1All displayed genes belong to this local TCS context.
Neighborhood span65 298-66 991 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 298 nt66 991 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS14265GCF_036209205#P4T56_RS14265
HKClassicCurrent focus
65 298-66 284 nt · Reverse (-)
P4T56_RS14270GCF_036209205#P4T56_RS14270
RROmpR
66 287-66 991 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007676595#FS640_RS17040Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2860096
Simplified PFAM architecture for HKOC_2860096
PFAM domain coverage: 111 / 328 aa (33.8%)
1 aa328 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-326]
- Domain count: 1
- Matched identifier: HKOC_2860096
- Positioned domains: HATPase_c 216-326
Cluster members and taxonomy
Representative gene: GCF_007676595#FS640_RS17040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key