1 HAMP#1
318-385 aa · 68 aa · 10.9% of protein
Raw token
HAMP:318:0.0000000000000572:385:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS08685
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209205
ClassHKTypeClassicLength624 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS08685Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length624 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 624 aa (39.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa624 aa
Domain-by-domain annotation3 items
2 HisKA#2
405-469 aa · 65 aa · 10.4% of protein
Raw token
HisKA:405:0.0000000000000514:469:65:643 HATPase_c#3
513-623 aa · 111 aa · 17.8% of protein
Raw token
HATPase_c:513:2.73e-22:623:112:109- Raw architecture: HAMP:318:0.0000000000000572:385:68:69#HisKA:405:0.0000000000000514:469:65:64#HATPase_c:513:2.73e-22:623:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000012.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66914-69474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_08670RefSeq proteinWP_097808227.1
Context group ID
GCF_036209205::NZ_JARLXK010000012.1::G00026Context members
P4T56_RS08680P4T56_RS08685
Partner locus tags
P4T56_RS08680P4T56_RS08685
Partner old locus tags
P4T56_08665P4T56_08670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097808227.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS08685Primary locus identifier stored in the genes table.
Old locus tagP4T56_08670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000012.1Sequence record reported by the local genomic context database.
Genomic interval67 600-69 474 nt1 875 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 914-69 474 ntGCF_036209205::NZ_JARLXK010000012.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000012.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000012.1All displayed genes belong to this local TCS context.
Neighborhood span66 914-69 474 nt2 561 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 914 nt69 474 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS08680GCF_036209205#P4T56_RS08680
RROmpR
66 914-67 603 nt · Forward (+)
P4T56_RS08685GCF_036209205#P4T56_RS08685
HKClassicCurrent focus
67 600-69 474 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209205#P4T56_RS08685The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0963396
Simplified PFAM architecture for HKOC_0963396
PFAM domain coverage: 226 / 624 aa (36.2%)
1 aa624 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[336-385] | HisKA[405-469] | HATPase_c[513-623]
- Domain count: 3
- Matched identifier: HKOC_0963396
- Positioned domains: HAMP 336-385 ; HisKA 405-469 ; HATPase_c 513-623
Cluster members and taxonomy
Representative gene: GCF_036209205#P4T56_RS08685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key