1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:3.95e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS08565
Response regulator OmpR family
Bacillus nitratireducens · GCF_036209205
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS08565Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.5% of protein
Raw token
Trans_reg_C:151:7.91e-25:225:76:77- Raw architecture: Response_reg:4:3.95e-28:113:111:111#Trans_reg_C:151:7.91e-25:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000012.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47576-49296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_08550RefSeq proteinWP_000276736.1
Context group ID
GCF_036209205::NZ_JARLXK010000012.1::G00025Context members
P4T56_RS08560P4T56_RS08565
Partner locus tags
P4T56_RS08560P4T56_RS08565
Partner old locus tags
P4T56_08545P4T56_08550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000276736.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q5SDJ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q5SDJ1_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS08565Primary locus identifier stored in the genes table.
Old locus tagP4T56_08550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000012.1Sequence record reported by the local genomic context database.
Genomic interval48 601-49 296 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 576-49 296 ntGCF_036209205::NZ_JARLXK010000012.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000012.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000012.1All displayed genes belong to this local TCS context.
Neighborhood span47 576-49 296 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 576 nt49 296 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS08560GCF_036209205#P4T56_RS08560
HKClassic
47 576-48 598 nt · Reverse (-)
P4T56_RS08565GCF_036209205#P4T56_RS08565
RROmpRCurrent focus
48 601-49 296 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293565#IEO_RS22110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1159028
Simplified PFAM architecture for RROC_1159028
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1159028
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_000293565#IEO_RS22110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key