1 HAMP#1
61-130 aa · 70 aa · 19.0% of protein
Raw token
HAMP:61:0.00000442:130:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS08495
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209205
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS08495Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 368 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.00000000000163:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:5.35e-24:364:113:109- Raw architecture: HAMP:61:0.00000442:130:70:69#HisKA:141:0.00000000000163:208:68:64#HATPase_c:253:5.35e-24:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000012.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31235-33032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_08480RefSeq proteinWP_016079136.1
Context group ID
GCF_036209205::NZ_JARLXK010000012.1::G00024Context members
P4T56_RS08490P4T56_RS08495
Partner locus tags
P4T56_RS08490P4T56_RS08495
Partner old locus tags
P4T56_08475P4T56_08480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016079136.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6PGP1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6PGP1_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS08495Primary locus identifier stored in the genes table.
Old locus tagP4T56_08480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000012.1Sequence record reported by the local genomic context database.
Genomic interval31 926-33 032 nt1 107 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 235-33 032 ntGCF_036209205::NZ_JARLXK010000012.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000012.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000012.1All displayed genes belong to this local TCS context.
Neighborhood span31 235-33 032 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 235 nt33 032 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS08490GCF_036209205#P4T56_RS08490
RROmpR
31 235-31 933 nt · Forward (+)
P4T56_RS08495GCF_036209205#P4T56_RS08495
HKClassicCurrent focus
31 926-33 032 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007676595#FS640_RS05990Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2700124
Simplified PFAM architecture for HKOC_2700124
PFAM domain coverage: 177 / 368 aa (48.1%)
1 aa368 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[142-207] | HATPase_c[253-363]
- Domain count: 2
- Matched identifier: HKOC_2700124
- Positioned domains: HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_007676595#FS640_RS05990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key