1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:1.47e-19:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS05750
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209205
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS05750Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.000000000238:365:97:109- Raw architecture: HisKA_3:177:1.47e-19:244:68:68#HATPase_c:289:0.000000000238:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000004.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span205830-207573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_05740RefSeq proteinWP_097809197.1
Context group ID
GCF_036209205::NZ_JARLXK010000004.1::G00017Context members
P4T56_RS05750P4T56_RS05755
Partner locus tags
P4T56_RS05750P4T56_RS05755
Partner old locus tags
P4T56_05740P4T56_05745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097809197.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS05750Primary locus identifier stored in the genes table.
Old locus tagP4T56_05740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000004.1Sequence record reported by the local genomic context database.
Genomic interval205 830-206 930 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span205 830-207 573 ntGCF_036209205::NZ_JARLXK010000004.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000004.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span205 830-207 573 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
205 830 nt207 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS05750GCF_036209205#P4T56_RS05750
HKClassicCurrent focus
205 830-206 930 nt · Reverse (-)
P4T56_RS05755GCF_036209205#P4T56_RS05755
RRNarL
206 935-207 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209205#P4T56_RS05750The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2716394
Simplified PFAM architecture for HKOC_2716394
PFAM domain coverage: 144 / 366 aa (39.3%)
1 aa366 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[177-243] | HATPase_c[289-365]
- Domain count: 2
- Matched identifier: HKOC_2716394
- Positioned domains: HisKA_3 177-243 ; HATPase_c 289-365
Cluster members and taxonomy
Representative gene: GCF_036209205#P4T56_RS05750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key