1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:2.31e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS04970
Response regulator OmpR family
Bacillus nitratireducens · GCF_036209205
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS04970Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.3% of protein
Raw token
Trans_reg_C:147:6.44e-27:221:76:77- Raw architecture: Response_reg:5:2.31e-38:114:111:111#Trans_reg_C:147:6.44e-27:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000004.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41495-43242Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_04960RefSeq proteinWP_000612403.1
Context group ID
GCF_036209205::NZ_JARLXK010000004.1::G00015Context members
P4T56_RS04965P4T56_RS04970
Partner locus tags
P4T56_RS04965P4T56_RS04970
Partner old locus tags
P4T56_04955P4T56_04960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000612403.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6PA85Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6PA85_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS04970Primary locus identifier stored in the genes table.
Old locus tagP4T56_04960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000004.1Sequence record reported by the local genomic context database.
Genomic interval42 565-43 242 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 495-43 242 ntGCF_036209205::NZ_JARLXK010000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span41 495-43 242 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 495 nt43 242 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS04965GCF_036209205#P4T56_RS04965
HKClassic
41 495-42 568 nt · Reverse (-)
P4T56_RS04970GCF_036209205#P4T56_RS04970
RROmpRCurrent focus
42 565-43 242 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS06990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1473822
Simplified PFAM architecture for RROC_1473822
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1473822
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS06990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key