1 HAMP#1
164-232 aa · 69 aa · 15.2% of protein
Raw token
HAMP:164:0.000000000000543:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS04885
Histidine kinase, Classic
Bacillus nitratireducens · GCF_036209205
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036209205#P4T56_RS04885Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 453 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-303 aa · 68 aa · 15.0% of protein
Raw token
HisKA:236:2.62e-17:303:68:643 HATPase_c#3
347-453 aa · 107 aa · 23.6% of protein
Raw token
HATPase_c:347:1.37e-28:453:108:109- Raw architecture: HAMP:164:0.000000000000543:232:69:69#HisKA:236:2.62e-17:303:68:64#HATPase_c:347:1.37e-28:453:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036209205::NZ_JARLXK010000004.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24162-26209Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_04875RefSeq proteinWP_001253240.1
Context group ID
GCF_036209205::NZ_JARLXK010000004.1::G00014Context members
P4T56_RS04885P4T56_RS04890
Partner locus tags
P4T56_RS04885P4T56_RS04890
Partner old locus tags
P4T56_04875P4T56_04880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001253240.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6PB18Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6PB18_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS04885Primary locus identifier stored in the genes table.
Old locus tagP4T56_04875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000004.1Sequence record reported by the local genomic context database.
Genomic interval24 162-25 523 nt1 362 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 162-26 209 ntGCF_036209205::NZ_JARLXK010000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span24 162-26 209 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 162 nt26 209 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4T56_RS04885GCF_036209205#P4T56_RS04885
HKClassicCurrent focus
24 162-25 523 nt · Reverse (-)
P4T56_RS04890GCF_036209205#P4T56_RS04890
RROmpR
25 520-26 209 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS07075Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1926792
Simplified PFAM architecture for HKOC_1926792
PFAM domain coverage: 225 / 453 aa (49.7%)
1 aa453 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-231] | HisKA[236-302] | HATPase_c[347-453]
- Domain count: 3
- Matched identifier: HKOC_1926792
- Positioned domains: HAMP 181-231 ; HisKA 236-302 ; HATPase_c 347-453
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS07075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key