1 Response_reg#1
3-123 aa · 121 aa · 31.8% of protein
Raw token
Response_reg:3:8.85e-31:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4T56_RS04480
Response regulator, RsbU family
Bacillus nitratireducens · GCF_036209205
ClassRRTypeRsbULength380 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036209205#P4T56_RS04480Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpoIIE
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage309 / 380 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 SpoIIESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation2 items
2 SpoIIE#2
190-377 aa · 188 aa · 49.5% of protein
Raw token
SpoIIE:190:5.72e-43:377:194:190- Raw architecture: Response_reg:3:8.85e-31:123:121:111#SpoIIE:190:5.72e-43:377:194:190
- Domain description: 1 Response_reg,1 SpoIIE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036209205::NZ_JARLXK010000003.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span284156-285298Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4T56_04470RefSeq proteinWP_097808520.1
Context group ID
GCF_036209205::NZ_JARLXK010000003.1::G00012Context members
P4T56_RS04480
Partner locus tags
P4T56_RS04480
Partner old locus tags
P4T56_04470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097808520.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4T56_RS04480Primary locus identifier stored in the genes table.
Old locus tagP4T56_04470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARLXK010000003.1Sequence record reported by the local genomic context database.
Genomic interval284 156-285 298 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span284 156-285 298 ntGCF_036209205::NZ_JARLXK010000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036209205::NZ_JARLXK010000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARLXK010000003.1All displayed genes belong to this local TCS context.
Neighborhood span284 156-285 298 nt1 143 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
284 156 nt285 298 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4T56_RS04480GCF_036209205#P4T56_RS04480
RRRsbUCurrent focus
284 156-285 298 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036209205#P4T56_RS04480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + SpoIIE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0423862
Simplified PFAM architecture for RROC_0423862
PFAM domain coverage: 308 / 380 aa (81.1%)
1 aa380 aa
Response_regSpoIIE
- Simplified architecture: Response_reg + SpoIIE
- Raw architecture: Response_reg[3-122] | SpoIIE[190-377]
- Domain count: 2
- Matched identifier: RROC_0423862
- Positioned domains: Response_reg 3-122 ; SpoIIE 190-377
Cluster members and taxonomy
Representative gene: GCF_036209205#P4T56_RS04480
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 2 over 2 total members. Page 1 / 1.
GCF_036209205#P4T56_RS04480 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_036209205
AssemblyASM3620920v1 · Scaffoldhaploid
Genome composition5 928 555 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 109 · HK 61 · RR 48CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key