1 Response_reg#1
7-117 aa · 111 aa · 47.4% of protein
Raw token
Response_reg:7:2.28e-34:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ULX16_RS10660
Response regulator OmpR family
Clostridioides difficile · GCF_034318265
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034318265#ULX16_RS10660Stable P2CS identifier used across views.
GenomeGCF_034318265Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:155:2.19e-26:231:77:77- Raw architecture: Response_reg:7:2.28e-34:117:111:111#Trans_reg_C:155:2.19e-26:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034318265::NZ_JAXKVC010000024.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54266-56568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagULX16_10650RefSeq proteinWP_003417859.1
Context group ID
GCF_034318265::NZ_JAXKVC010000024.1::G00037Context members
ULX16_RS10660ULX16_RS10665
Partner locus tags
ULX16_RS10660ULX16_RS10665
Partner old locus tags
ULX16_10650ULX16_10655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417859.1Primary protein accession used for annex mappings.
UniProt accessionD5Q0B0Primary UniProt accession resolved in the annex database.
UniProt IDD5Q0B0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagULX16_RS10660Primary locus identifier stored in the genes table.
Old locus tagULX16_10650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXKVC010000024.1Sequence record reported by the local genomic context database.
Genomic interval54 266-54 970 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 266-56 568 ntGCF_034318265::NZ_JAXKVC010000024.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034318265::NZ_JAXKVC010000024.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXKVC010000024.1All displayed genes belong to this local TCS context.
Neighborhood span54 266-56 568 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 266 nt56 568 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ULX16_RS10660GCF_034318265#ULX16_RS10660
RROmpRCurrent focus
54 266-54 970 nt · Reverse (-)
ULX16_RS10665GCF_034318265#ULX16_RS10665
HKClassic
54 961-56 568 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047422
Simplified PFAM architecture for RROC_1047422
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-117] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1047422
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034318265
AssemblyASM3431826v1 · Scaffoldhaploid
Genome composition3 992 136 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key